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ywbI [2019-06-19 12:42:12]
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ywbI [2019-06-19 12:42:12]

transcriptional regulator (LysR family), activator of the ywbH-ywbG operon
Locus
BSU38310
Isoelectric point
5.93
Molecular weight
34.52 kDa
Protein length
301 aa Sequence Blast
Gene length
906 bp Sequence Blast
Function
control of expression of the ywbH-ywbG operon
Product
transcriptional regulator (LysR family)
Essential
no
Synonyms
ipa-24d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Information processing → Regulation of gene expression → Transcription factors and their control → Transcription factor/ other/ based on similarity

    • Gene

    Coordinates
    3,932,198 → 3,933,103

    The protein

    Protein family

  • LysR family

    • Effectors of protein activity

  • acetate activates YwbI to bind DNA PubMed

    • Structure

  • 3FZV (from Pseudomonas aeruginosa, 28% identity)

    • Expression and Regulation

    Operons

    Genes
    ywbI-thiM-thiE
    Description
    PubMed

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon
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    Biological materials

    Mutant

  • MGNA-B675 (ywbI::erm), available at the NBRP B. subtilis, Japan
  • BKE38310 (ΔywbI::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG
  • BKK38310 (ΔywbI::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGCGCTTCACCCTTTCTA, downstream forward: _UP4_AAAGATAGTAAAGGATGATG

    • References

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