SubtiBank SubtiBank
ycgG [2019-06-18 11:21:33]
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ycgG [2019-06-18 11:21:33]

unknown
locus
BSU03100
pI
9.19
mw
29.04 kDa
protein length
253 aa Sequence Blast
gene length
762 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    335,329 → 336,090

    The protein

    Paralogous protein(s)

  • [protein|0B5A1E73710CF6A158925CC51E170BA7BEF3B495|YqcI]

    • Expression and Regulation

    Operons

    genes
    [gene|D948867BAEF91943250714453A474B90AB64E523|ycgE]-[gene|78B3F9580DED32469ACF537F4B40C7DBF0D4D995|ycgF]-[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|78B3F9580DED32469ACF537F4B40C7DBF0D4D995|ycgF]-[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]
    description
    [Pubmed|12662922]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|12662922], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulation

  • subject to negative regulation by [SW|SpoIIID] [Pubmed|15383836]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B988 (ycgG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1987 NBRP B. subtilis, Japan]
  • GP1851 (Δ[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]::aphA3)), available in [SW|Jörg Stülke]'s lab [Pubmed|25092907]
  • BKE03100 (Δ[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGATCCACCTCCAGTAT, downstream forward: _UP4_AACATGTTCAACAAAATGAA
  • BKK03100 (Δ[gene|CBEC4D299232FC5FCB57211525404CBD42D5AF68|ycgG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGATCCACCTCCAGTAT, downstream forward: _UP4_AACATGTTCAACAAAATGAA

    • Expression vectors

  • IPTG inducible expression of Strep-''ycgG'' in ''E. coli'': pGP2578 (in [SW|pGP172]), available in [SW|Jörg Stülke]'s lab

    • References

  • 12662922,15383836,23420519,25092907