SubtiBank SubtiBank
ydgF
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ydgF

similar to amino acid permease
Locus
BSU_05620
Isoelectric point
9.34
Molecular weight
50.63 kDa
Protein length
458 aa Sequence Blast
Gene length
1377 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Cellular processes → Transporters → Transporters/ other → Amino acid transporters → APC superfamily
  • Groups of genes → Membrane proteins

    • Gene

    Coordinates
    606,699 → 608,075

    The protein

    Protein family

  • amino acid-polyamine-organocation (APC) superfamily (according to UniProt)

    • Paralogous protein(s)

  • AapA, GabP, YtnA, HutM, YvbW, YbxG, RocC, RocE, YbgF

    • Structure

  • 6F34 (from Geobacillus kaustophilus, the C-terminal domain, aa 203-458, 26% identity) PubMed

    • Localization

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    Genes
    ydgF
    Description
    PubMed
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    Biological materials

    Mutant

  • GP2930 (ΔydgF::cat) available in Jörg Stülke's lab PubMed
  • MGNA-C084 (ydgF::erm), available at the NBRP B. subtilis, Japan
  • BKE05620 (ΔydgF::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CACTTTATGTGTTCCTCCAT, downstream forward: _UP4_TAAGACTCAAAACTCCTGCC
  • BKK05620 (ΔydgF::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CACTTTATGTGTTCCTCCAT, downstream forward: _UP4_TAAGACTCAAAACTCCTGCC

    • References

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