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ywcC [2019-03-13 12:15:35]
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ywcC [2019-03-13 12:15:35]

transcription repressor (TetR family), controls slrA expression
locus
BSU38220
pI
8.47
mw
25.96 kDa
protein length
223 aa Sequence Blast
gene length
672 bp Sequence Blast
function
control of SlrA expression
product
transcription repressor (TetR family)
essential
no
synonyms
ipa-33d
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.5|Transcription factors/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.2|Biofilm formation]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.2|Biofilm formation] → [category|SW 4.1.2.5|Other proteins required for biofilm formation]

    • Gene

    Coordinates
    3,922,292 → 3,922,963

    The protein

    Protein family

  • [SW|TetR family]

    • Expression and Regulation

    Operons

    genes
    [gene|C3D87DAA8DB124D50D2C2B2D424C9608C0DE067F|ywcC]-[gene|FD30C4E458E63E8D6A932B351D4224F1AACD4B1B|gtcA]-[gene|36930CC6FDFCA23D43E264FEA375B78A1434E1BD|galK]-[gene|591428EA1C3D40322BB942429607AF61A90BAF41|galT]
    description
    [Pubmed|22383849,22893383]

    regulation

  • repressed by glucose ([protein|search|CcpA]) [Pubmed|10666464]
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    Biological materials

    Mutant

  • MGNA-B230 (ywcC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1229 NBRP B. subtilis, Japan]
  • BKE38220 (Δ[gene|C3D87DAA8DB124D50D2C2B2D424C9608C0DE067F|ywcC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTTTCTCCTGGCGGT, downstream forward: _UP4_CAGTGAAGTATAGAGAAATA
  • BKK38220 (Δ[gene|C3D87DAA8DB124D50D2C2B2D424C9608C0DE067F|ywcC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38220 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATTTTTCTCCTGGCGGT, downstream forward: _UP4_CAGTGAAGTATAGAGAAATA

    • References

    Reviews

  • 24006471

    • Original publications

  • 18647168,22383849,22893383,19788541,27891125