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ydeF [2018-06-07 19:08:13]
similar to transcriptional regulator (MocR/ GabR family)
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]Gene
Coordinates
564,704 → 566,101
The protein
Protein family
[[MocR/ GabR family]] [Pubmed|22020104][SW|Domains]
N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.Biological materials
Mutant
MGNA-C082 (ydeF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2080 NBRP B. subtilis, Japan]BKE05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAABKK05180 (Δ[gene|C2EB2BE786A5C155DE440E52CB430B25E70C8AA7|ydeF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05180 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAAReferences