SubtiBank SubtiBank
ydeF
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ydeF

similar to transcriptional regulator (MocR/ GabR family)
Locus
BSU_05180
Isoelectric point
6.09
Molecular weight
51.64 kDa
Protein length
465 aa Sequence Blast
Gene length
1398 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms

Genomic Context

      
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Categories containing this gene/protein

Gene

Coordinates
564,704 → 566,101

The protein

Protein family

Domains

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • HTH gntR-type domain (aa 22-90) (according to UniProt)
  • Cofactors

  • PLP
  • Structure

  • 4MGR (GabR, 23% identity) PubMed
  • Biological materials

    Mutant

  • MGNA-C082 (ydeF::erm), available at the NBRP B. subtilis, Japan
  • BKE05180 (ΔydeF::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAA
  • BKK05180 (ΔydeF::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGATACGCATCCTTTTTC, downstream forward: _UP4_TAATATTGTTTGCCATACAA
  • References

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