SubtiBank SubtiBank
ykuT
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ykuT

mechanosensitive channel, similar to MscS, general stress protein
locus
BSU_14210
pI
5.65
mw
29.88 kDa
protein length
267 aa Sequence Blast
gene length
804 bp Sequence Blast
function
resistance to osmotic downshock
product
anion-selective mechanosensitive channel of small conductance
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.7|Coping with hypo-osmotic stress]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,491,221 → 1,492,024

    The protein

    Protein family

  • [SW|MscS (TC 1.A.23) family] (according to UniProt)

    • Structure

  • [PDB|3T9N] (from Thermoanaerobacter tengcongensis, 40% identity) [pubmed|23074248]

    • [SW|Localization]

  • cell membrane [Pubmed|19252899]

    • Expression and Regulation

    Operons

    genes
    [gene|C0C65835A0E2680F52D391BF4EAB7F463FBB1DD3|ykuT]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|11544224], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B342 (ykuT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1341 NBRP B. subtilis, Japan]
  • 1A960 ( ''ykuT''::''cat''), [Pubmed|18310427], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A960&Search=1A960 BGSC]
  • BKE14210 (Δ[gene|C0C65835A0E2680F52D391BF4EAB7F463FBB1DD3|ykuT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE14210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTGAGCTCCTTTTCTA, downstream forward: _UP4_TAAATAAAAGAACCGAAGCT
  • BKK14210 (Δ[gene|C0C65835A0E2680F52D391BF4EAB7F463FBB1DD3|ykuT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK14210 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTGAGCTCCTTTTCTA, downstream forward: _UP4_TAAATAAAAGAACCGAAGCT

    • Labs working on this gene/protein

  • [SW|Erhard Bremer], University of Marburg, Germany [http://www.uni-marburg.de/fb17/fachgebiete/mikrobio/molmibi homepage]

    • References

    Reviews

  • 12626684,22685280,22404681,24607989,17505523

    • Original Publications

  • 17665170,18310427,19252899,11544224,23074248