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ytrB [2019-09-02 12:54:25]
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ytrB [2019-09-02 12:54:25]

ABC transporter (ATP-binding protein)
Locus
BSU_30450
Isoelectric point
5.51
Molecular weight
33.67 kDa
Protein length
292 aa Sequence Blast
Gene length
879 bp Sequence Blast
Function
unknown
Product
ABC transporter (ATP-binding protein)
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Cellular processes → Transporters → ABC transporters → Unknown ABC transporters
  • Lifestyles → Coping with stress → Cold stress proteins
  • Groups of genes → Membrane proteins

    • Gene

    Coordinates
    3,117,976 → 3,118,854

    The protein

    Protein family

  • ABC transporter superfamily (according to UniProt)

    • Structure

  • 1VPL (from Thermotoga maritima, 31% identity)

    • Localization

  • cell membrane (via YtrC-YtrD) PubMed

    • Expression and Regulation

    Operons

    Genes
    ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF
    Description
    PubMed

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon

    • Regulatory mechanism

  • YtrA: repression, PubMed, in YtrA regulon

    • Regulation

  • expressed early in the stationary phase PubMed
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    Biological materials

    Mutant

  • GP2646 Δ(ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF)::ermC, available in Jörg Stülke's lab
  • MGNA-A131 (ytrB::erm), available at the NBRP B. subtilis, Japan
  • BKE30450 (ΔytrB::erm trpC2) available at BGSC and in Jörg Stülke's lab, PubMed, upstream reverse: _UP1_GTTCAATCATTTTTTTTGCC, downstream forward: _UP4_AGATGGTAGACCGAGGTCTC
  • BKK30450 (ΔytrB::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_GTTCAATCATTTTTTTTGCC, downstream forward: _UP4_AGATGGTAGACCGAGGTCTC

    • References

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