SubtiBank SubtiBank
ykfD
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ykfD

similar to oligopeptide ABC transporter (permease)
Locus
BSU_13000
Isoelectric point
9.34
Molecular weight
36.83 kDa
Protein length
329 aa Sequence Blast
Gene length
990 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
Loading

Categories containing this gene/protein

  • Cellular processes → Transporters → ABC transporters → Importers → Uptake of peptides
  • Metabolism → Amino acid/ nitrogen metabolism → Utilization of nitrogen sources other than amino acids → Utilization of peptides
  • Groups of genes → Membrane proteins

    • Gene

    Coordinates
    1,368,844 → 1,369,833

    The protein

    Protein family

  • ABC transporter superfamily (according to UniProt)

    • Paralogous protein(s)

  • OppF, AppF

    • Domains

  • ABC transporter domain (aa 7-252) (according to UniProt)

    • Structure

  • 4FWI (dipeptide transporter from Thermoanaerobacter tengcongensis, 36% identity) PubMed

    • Localization

  • attached to the cell membrane (via DppB-DppC) PubMed

    • Expression and Regulation

    Operons

    Genes
    dppA-dppB-dppC-dppD-dppE-ykfA-ykfB-ykfC-ykfD
    Description
    PubMed

    Regulatory mechanism

  • CodY: repression, PubMed, in CodY regulon
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A743 (ykfD::erm), available at the NBRP B. subtilis, Japan
  • BKE13000 (ΔykfD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGTCTCCCTCCTTATT, downstream forward: _UP4_TAAATAAAAAGAGTGGCTCC
  • BKK13000 (ΔykfD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGTCTCCCTCCTTATT, downstream forward: _UP4_TAAATAAAAAGAGTGGCTCC

    • References

    Loading