SubtiBank SubtiBank
yobS
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yobS

similar to transcription factor
locus
BSU_19070
pI
6.23
mw
20.87 kDa
protein length
191 aa Sequence Blast
gene length
576 bp Sequence Blast
function
unknown
product
similar to transcription factor
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    2,081,172 → 2,081,747

    The protein

    [SW|Domains]

  • [SW|HTH tetR-type domain] (aa 6-66) (according to UniProt)

    • Structure

  • [PDB|1ZK8] (from B. cereus, 42% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|EDD0C5732E487A7F94684289F59B9130773316C1|yobT]-[gene|BB122C73972ACEA08DE97F95FC9AC249671C86A3|yobS]-[gene|6D9AAA63C4E43D2F80C7A2104BDF4D98A21C3B78|yobR]-[gene|6C67AD722D59671ED7589949690773732A8B845F|yobQ]-[gene|DA4A64BDF322EDE9EECE83AC9D4AAA01D3F16720|csaA]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A315 (yobS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/315 NBRP B. subtilis, Japan]
  • BKE19070 (Δ[gene|BB122C73972ACEA08DE97F95FC9AC249671C86A3|yobS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCTATTCTCGGTGACATGC, downstream forward: _UP4_TAAACAAATAAATGGATGTC
  • BKK19070 (Δ[gene|BB122C73972ACEA08DE97F95FC9AC249671C86A3|yobS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19070 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCTATTCTCGGTGACATGC, downstream forward: _UP4_TAAACAAATAAATGGATGTC