SubtiBank SubtiBank
ytbD [2018-10-04 20:32:02]
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ytbD [2018-10-04 20:32:02]

similar to antibiotic resistance protein
locus
BSU29040
pI
9.89
mw
41.47 kDa
protein length
396 aa Sequence Blast
gene length
1188 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.14|Resistance against toxins/ antibiotics/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    2,968,824 → 2,970,014

    The protein

    Protein family

  • major facilitator superfamily (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|BADE5937ECB41C96C82E6A3BDA8FDC9BFC21F219|ytbD]-[gene|DE12190315DADF13DA1BA272924729BBF909B1D9|ytbE]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A004 (ytbD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/4 NBRP B. subtilis, Japan]
  • BKE29040 (Δ[gene|BADE5937ECB41C96C82E6A3BDA8FDC9BFC21F219|ytbD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE29040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATGTTCCTCCTTTGTA, downstream forward: _UP4_TGACAATTTTAAAGGAGGAA
  • BKK29040 (Δ[gene|BADE5937ECB41C96C82E6A3BDA8FDC9BFC21F219|ytbD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK29040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATGTTCCTCCTTTGTA, downstream forward: _UP4_TGACAATTTTAAAGGAGGAA