SubtiBank SubtiBank
rnc [2017-06-06 08:58:17]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

rnc [2017-06-06 08:58:17]

RNase III; required for the degradation of sense/antisense transcripts in Gram positive, low GC bacteria
Locus
BSU15930
Isoelectric point
8.08
Molecular weight
28.28 kDa
Protein length
249 aa Sequence Blast
Gene length
747 bp Sequence Blast
Function
cleaves both 5- and 3-sites of the small cytoplasmic RNA precursor (scr)
Product
endoribonuclease III
Essential
yes
Synonyms
rncS

Genomic Context

      
Loading

Categories containing this gene/protein

Gene

Coordinates
1,665,710 → 1,666,459

Phenotypes of a mutant

  • essential PubMed
  • the rnc gene can be deleted in strains cured of the Skin element and [[SPß prophage]] (or upon deletion of the toxin genes txpA and yonT) PubMed
  • The protein

    Catalyzed reaction/ biological activity

  • Endonucleolytic cleavage of double-stranded RNA to 5'-phosphomonoester (according to Swiss-Prot)
  • cleaves both 5'- and 3'-sites of the small cytoplasmic RNA precursor (scr)
  • degradation of txpA mRNA-FFCE5AD9E04E6D5F7970E89781C545E7DBDF45F0 RNA duplex (encoded on the Skin element) PubMed
  • degradation of yonT mRNA-SR6 RNA duplex (encoded on the [[SP-beta prophage]]) PubMed
  • degradation of the roxS-ytdI and roxS-sucC RNA duplexes PubMed
  • Structure

  • 1O0W (from Thermotoga maritima, 41% identity)
  • Localization

  • cytoplasm (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    Genes
    Description

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon
  • Regulatory mechanism

  • stringent response: negative regulation, in stringent response
  • Regulation

  • expressed during vegetative growth and during sporulation in the mother cell (SigK, GerE) PubMed
  • view in new tab

    Biological materials

    Two-hybrid system

  • B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Stülke lab
  • Labs working on this gene/protein

    References

    Reviews

    Loading

    Original publications

    Loading