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yvdD [2019-07-12 08:32:32]
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yvdD [2019-07-12 08:32:32]

putative lysine decarboxylase
locus
BSU34640
pI
5.09
mw
20.91 kDa
protein length
191 aa Sequence Blast
gene length
576 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    3,558,940 → 3,559,515

    The protein

    Protein family

  • UPF0717 family (according to Swiss-Prot)

    • Structure

  • [PDB|1T35]

    • Additional information

  • Detected in spores. [Pubmed|12480901]

    • Expression and Regulation

    Operons

    genes
    [gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]
    description
    [Pubmed|22383849]

    additional information

  • Putative NrdR-box located between [protein|search|YvdC] and [protein|search|YvdD], suggesting transcriptional regulation by NrdR ([protein|search|YtcG]). [Pubmed|15949864]
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    Biological materials

    Mutant

  • MGNA-B629 (yvdD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1628 NBRP B. subtilis, Japan]
  • BKE34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC, downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
  • BKK34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC, downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT

    • References

  • 12480901,15949864,22383849