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yvdD
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yvdD

putative lysine decarboxylase
locus
BSU_34640
pI
5.09
mw
20.91 kDa
protein length
191 aa Sequence Blast
gene length
576 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]
  • Gene

    Coordinates
    3,558,940 → 3,559,515

    The protein

    Protein family

  • LOG family (single member, according to UniProt)
  • Structure

  • [PDB|1T35]
  • Additional information

  • Detected in spores. [Pubmed|12480901]
  • Expression and Regulation

    Operons

    genes
    [gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]
    description
    [Pubmed|22383849]

    additional information

  • Putative NrdR-box located between [protein|search|YvdC] and [protein|search|YvdD], suggesting transcriptional regulation by NrdR ([protein|search|YtcG]). [Pubmed|15949864]
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    Biological materials

    Mutant

  • MGNA-B629 (yvdD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1628 NBRP B. subtilis, Japan]
  • BKE34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC, downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
  • BKK34640 (Δ[gene|B9DA06BF3617B86AD12A703A36D8BA2E0091AC8B|yvdD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCTTGTCATCTCCGCATC, downstream forward: _UP4_TAAAAAAGAGATTTTCTGAT
  • References

  • 12480901,15949864,22383849