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ytdI [Tue Dec 13 2016 11:16:35 GMT+0100 (CET)]
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ytdI [Tue Dec 13 2016 11:16:35 GMT+0100 (CET)]

inorganic polyphosphate/ATP-NAD kinase
locus
BSU29540
pI
6.49
mw
30.00 kDa
function
generation of NADP from NAD
product
inorganic polyphosphate/ATP-NAD kinase
essential
no
ec
2.7.1.23
synonyms
ppnKB

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.6|Additional metabolic pathways] → [category|SW 2.6.2|Biosynthesis of cofactors] → [category|SW 2.6.2.11|Biosynthesis of NAD(P)]
  • [SW|Categories] containing this gene/protein

  • [SW|biosynthesis of cofactors]
  • Gene

    Coordinates on the chromosome (coding sequence)
    3,021,233 -> 3,022,036

    The protein

    Catalyzed reaction/ biological activity

  • ATP + NAD+ = ADP + NADP+ (according to Swiss-Prot)
  • Protein family

  • NAD kinase family (according to Swiss-Prot)
  • Structure

  • [PDB|1YT5] (from ''Thermotoga maritima'') [Pubmed|16511117]
  • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)
  • Expression and Regulation

    Operon

  • ''[protein|search|ytdI]'' [Pubmed|21815947]
  • Regulatory mechanism

  • [protein|search|RoxS]: inhibition of translation and initiation of RNA degradation by [rny|search|RNase Y] and [rnc|search|RNase III] [Pubmed|25643072]
  • Additional information

  • the mRNA base-pairs with the [protein|search|RoxS] [protein|search|sRNA] [PubMed|25643072]
  • half-life of the mRNA: 8.4 min, in a '[protein|search|roxS]' mutant 15 min, in a '[protein|search|rny]' mutant 24 min [PubMed|25643072]
  • the mRNA is substantially stabilized upon depletion of [Rny|search|RNase Y] [PubMed|21815947]
  • the '[protein|search|roxS]'-'[protein|search|ppnKB]' RNA duplex forms a cleavage site for [rnc|search|RNase III] [PubMed|25643072]
  • two pathways of mRNA degradation: (i) by [rny|search|RNase Y], (ii) by combined action of [protein|search|RoxS] and [rnc|search|RNase III] [PubMed|25643072]
  • References

  • 16511117,25643072,21815947