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ylaD [2018-05-16 12:32:31]
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ylaD [2018-05-16 12:32:31]

anti-Sigma ([protein|544344B61A804F367BB726976E0C87B61998490A|YlaC])
locus
BSU14740
pI
4.47
mw
11.27 kDa
protein length
97 aa Sequence Blast
gene length
291 bp Sequence Blast
function
control of sigma factor [protein|544344B61A804F367BB726976E0C87B61998490A|YlaC]
product
anti-Sigma ([protein|544344B61A804F367BB726976E0C87B61998490A|YlaC])
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.1|Sigma factors and their control] → [category|SW 3.4.1.2|Control of sigma factors]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,544,603 → 1,544,896

    The protein

    [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|6BB9336E8F5007274026A89BFC3744B52F28E42D|ylaA]-[gene|0703D458DB489F49150DD9E3477A87DC354A7B7F|ylaB]-[gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]-[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]
    description
    [Pubmed|16501307]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|16501307], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|544344B61A804F367BB726976E0C87B61998490A|YlaC]: sigma factor, [Pubmed|16501307], in [regulon|544344B61A804F367BB726976E0C87B61998490A|YlaC regulon]

    • regulatory mechanism

  • [protein|2C6386E9A63F410558D168798D077DF91590F454|Spx]: activation, [Pubmed|16501307], in [regulon|2C6386E9A63F410558D168798D077DF91590F454|Spx regulon]

    • regulation

  • [protein|search|Spx]: transcription activation [Pubmed|16501307]
    • view in new tab

    genes
    [gene|544344B61A804F367BB726976E0C87B61998490A|ylaC]-[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]
    description
    [Pubmed|16501307]

    regulation

  • [protein|search|Spx]: transcription activation [Pubmed|16501307]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-A535 (ylaD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/535 NBRP B. subtilis, Japan]
  • BKE14740 (Δ[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE14740 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGTCATATCCGCTCCTCCTC, downstream forward: _UP4_TAAAAAAAGCGCTTGTCCGA
  • BKK14740 (Δ[gene|B454D14B33E2C11F0BB0A1D1BB743FA64981A966|ylaD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK14740 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GGTCATATCCGCTCCTCCTC, downstream forward: _UP4_TAAAAAAAGCGCTTGTCCGA

    • References

  • 16501307,16728958