SubtiBank SubtiBank
ydfS [2018-06-21 17:38:38]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydfS [2018-06-21 17:38:38]

unknown
locus
BSU05540
pI
8.45
mw
26.96 kDa
protein length
235 aa Sequence Blast
gene length
705 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    601,019 → 601,726

    The protein

    Paralogous protein(s)

  • [protein|EBD0F966FD7B3662814D530064BD307561A5CB15|YetF]
  • Structure

  • [PDB|3C6F] ([protein|EBD0F966FD7B3662814D530064BD307561A5CB15|YetF], corresponds to aa 81 ... 230, 36% identity)
  • Expression and Regulation

    Operons

    genes
    [gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]
    description
    [Pubmed|16497325]

    sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]
  • regulation

  • expressed during sporulation in the forespore ([protein|search|SigG]) [Pubmed|16497325]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-C156 (ydfS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2154 NBRP B. subtilis, Japan]
  • BKE05540 (Δ[gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTATGGCGCTCCCCGC, downstream forward: _UP4_AAGGAATGAAGGAACAATCA
  • BKK05540 (Δ[gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTATGGCGCTCCCCGC, downstream forward: _UP4_AAGGAATGAAGGAACAATCA
  • References

  • 16497325