ydfS [2018-06-21 17:38:38]

unknown

locus: BSU05540

pI: 8.45

mw: 26.96 kDa

protein length: 235 aa

gene length: 705 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 601,019 → 601,726

The protein

Paralogous protein(s)

• [protein|EBD0F966FD7B3662814D530064BD307561A5CB15|YetF]

Structure

• [PDB|3C6F] ([protein|EBD0F966FD7B3662814D530064BD307561A5CB15|YetF], corresponds to aa 81 ... 230, 36% identity)

Expression and Regulation

Operons

• genes: [gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]
  description: [Pubmed|16497325]

  sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

  regulation

  • expressed during sporulation in the forespore ([protein|search|SigG]) [Pubmed|16497325]

Biological materials

Mutant

• MGNA-C156 (ydfS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2154 NBRP B. subtilis, Japan]
• BKE05540 (Δ[gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTATGGCGCTCCCCGC, downstream forward: _UP4_AAGGAATGAAGGAACAATCA
• BKK05540 (Δ[gene|B37938C639FC87DAA72AA82998DA8DF25E63CF37|ydfS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTATGGCGCTCCCCGC, downstream forward: _UP4_AAGGAATGAAGGAACAATCA

References

• 16497325