yclH [2018-05-04 16:57:53]

similar to [SW|ABC transporter] (ATP-binding protein)

locus: BSU03730

pI: 8.17

mw: 25.06 kDa

protein length: 226 aa

gene length: 678 bp

function: unknown

product: [SW|ABC transporter] (ATP-binding protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 424,208 → 424,888

The protein

Protein family

• [SW|ABC transporter] domain (according to Swiss-Prot)

Paralogous protein(s)

• [protein|0F8048267EC038D8CF673317D969BA27735473A7|YvrO]

[SW|Localization]

• membrane associated (via [protein|FFCC02FA996D570C69F79AAC22C2C4FCAD9E89D9|YclI]) [Pubmed|10092453]

Expression and Regulation

Operons

• genes: [gene|FFCC02FA996D570C69F79AAC22C2C4FCAD9E89D9|yclI]-[gene|B23CAC2563A36415C482AE2FA695E09228EF5B32|yclH]
  description: [Pubmed|20512483]

  regulatory mechanism

  • [protein|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ]: activation, [Pubmed|20512483], in [regulon|706983E6942E883D3A9D45693E7B4015AEABE60B|YclJ regulon]

Biological materials

Mutant

• MGNA-C005 (yclH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2003 NBRP B. subtilis, Japan]
• BKE03730 (Δ[gene|B23CAC2563A36415C482AE2FA695E09228EF5B32|yclH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TAAGCTCATAGGTTCCGCCT, downstream forward: _UP4_TAACAAAACGCGCCTCTGCC
• BKK03730 (Δ[gene|B23CAC2563A36415C482AE2FA695E09228EF5B32|yclH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TAAGCTCATAGGTTCCGCCT, downstream forward: _UP4_TAACAAAACGCGCCTCTGCC

References

• 10092453,20512483