yqiK [2017-8-11 16:0:3]

cytoplasmic glycerophosphodiester phosphodiesterase

locus: BSU24180

pI: 6.43

mw: 26.81 kDa

protein length: 239 aa

gene length: 717 bp

function: unknown

product: cytoplasmic glycerophosphodiester phosphodiesterase

essential: no

synonyms

Genomic Context

categories

• [category|SW 2|Metabolism] → [category|SW 2.4|Lipid metabolism] → [category|SW 2.4.1|Utilization of lipids] → [category|SW 2.4.1.2|Utilization of phospholipids/ based on similarity]

Gene

Coordinates: 2,514,169 → 2,514,900

The protein

Paralogous protein(s)

• [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|GlpQ], [protein|04CACAF4F786090AB67D7C606C944F07B7A7FE55|YhdW]

Structure

• [PDB|2PZ0] (GdpP from Thermoanaerobacter tengcongensis, 43% identity) [pubmed|18214974]

[SW|Localization]

• cytoplasm (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|AEA18C431FE13FC34671E673DC6733B200E342A8|yqiH]-[gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]-[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
  description: [Pubmed|22843846,22383849]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22843846], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  regulation

  • only expressed under conditions of high osmolarity [Pubmed|32419322,22843846]

• genes: [gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C458 (yqiK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2456 NBRP B. subtilis, Japan]
• BKE24180 (Δ''[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]''::''ermC'') (available in the BGSC and in [SW|Jörg Stülke]'s lab) [pubmed|28189581]

References

• 22383849,22843846,18214974