yndD [2019-06-19 12:58:31]

part of the [protein|AE28299B0F274B189DD90554A5A4F7B9A9479B60|YndD]-[protein|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|YndE]-[SW|YndF] germinant receptor of unknown specificity

locus: BSU17750

pI: 9.23

mw: 57.84 kDa

protein length: 520 aa

gene length: 1563 bp

function: [category|SW 4.2.4|Germination]

product: part of the [protein|AE28299B0F274B189DD90554A5A4F7B9A9479B60|YndD]-[protein|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|YndE]-[protein|2211659780DEC3F4131B127E68EEF626534DF4BE|YndF] germinant receptor

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.5|Germination/ based on similarity]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 1,907,494 1,909,056

The protein

Protein family

• gerABKA family (according to Swiss-Prot)

Paralogous protein(s)

• [protein|EDB2F4C132211F01654F2A2ED3D220EC15CE6F22|GerKA], [protein|EEDE6A22E91992ABCA677CAB7917B7168C5CB868|GerAA], [protein|3368743E6E03792DB83A38A19989123304DF7560|GerBA], [protein|7CE0CAF27B1C0F507E783B8B80622270B00634FD|YfkQ]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|AE28299B0F274B189DD90554A5A4F7B9A9479B60|yndD]-[gene|B14179D0EF5D3493E5CDB8E15378A5088B4FFD10|yndE]-[gene|2211659780DEC3F4131B127E68EEF626534DF4BE|yndF]
  description: [Pubmed|16497325]

  sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190,16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

  regulation

  • expressed late during sporulation in the forespore ([protein|search|SigG]) [Pubmed|15699190,16497325]

Biological materials

Mutant

• MGNA-A022 (yndD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/22 NBRP B. subtilis, Japan]
• BKE17750 ([gene|AE28299B0F274B189DD90554A5A4F7B9A9479B60|yndD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE17750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCACCTTCTTATACAT, downstream forward: _UP4_TGATGAACTCGACAGGATGG
• BKK17750 ([gene|AE28299B0F274B189DD90554A5A4F7B9A9479B60|yndD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK17750 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCACCTTCTTATACAT, downstream forward: _UP4_TGATGAACTCGACAGGATGG

References

• 15699190,16497325,10762253