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yrrN
tRNA uridine hydroxylase (in complex with [protein|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|YrrO])
function
introduction of 5-methoxyuridine modification in tRNA (U34)
product
tRNA uridine hydroxylase
Genomic Context
categories
[category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]Gene
Coordinates
2,794,147 2,795,076
Phenotypes of a mutant
50% reduction in mo5U tRNA levels [pubmed|31358606]The protein
Catalyzed reaction/ biological activity
hydroxylation of U34 in tRNA to give 5-hydroxyuridine (ho5U) (in complex with [protein|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|YrrO]) with prephenate as hydroxyl donor, ho5U is the precursor for 5-methoxyuridine modification (by [protein|CE4F2965077F2A5882432D683520E09B70B9369A|TrmR]) [pubmed|31358606]Protein family
peptidase U32 family (with [protein|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|YrrO], according to UniProt)Paralogous protein(s)
[protein|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|YrrO] Expression and Regulation
Operons
genes
[gene|CE4F2965077F2A5882432D683520E09B70B9369A|trmR]-[gene|A3EC327DA14F188E88AF4221B51EE5950F882277|yrrN]-[gene|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|yrrO]-[gene|A659D9894E777D8A99707CB750DF2918AEE06CE9|udk]-[gene|6FBF27C12B4B3DC2CE373E5199357042114471F8|greA]
description
[Pubmed|22383849]
view in new tabBiological materials
Mutant
MGNA-A008 (yrrN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/8 NBRP B. subtilis, Japan]BKE27350 ([gene|A3EC327DA14F188E88AF4221B51EE5950F882277|yrrN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGACGTTCACCTCTTCTT, downstream forward: _UP4_TATTAATCAAAAGGAGGTTABKK27350 ([gene|A3EC327DA14F188E88AF4221B51EE5950F882277|yrrN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27350 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGACGTTCACCTCTTCTT, downstream forward: _UP4_TATTAATCAAAAGGAGGTTAReferences