yrzB [2019-07-08 09:26:09]

unknown

locus: BSU27380

pI: 3.32

mw: 10.68 kDa

protein length: 93 aa

gene length: 282 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 2,797,100 2,797,381

The protein

Protein family

• UPF0473 family (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|C5457FEC46A1AFC6E5B1148B0E5F258B2C3197B2|reoM]-[gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]-[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]
  description: [pubmed|22383849]

• genes: [gene|8C5C7F9A585AE89D53EAF1DB3A9AB525B9E30B4A|alaS]-[gene|C5457FEC46A1AFC6E5B1148B0E5F258B2C3197B2|reoM]-[gene|508FC7117B4CE7AF119B3830AE9DC113CB058039|yrrK]-[gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]
  description: [pubmed|22383849]

  regulatory mechanism

  • [regulon|T-box|T-box]: antitermination, in [regulon|T-box|T-box]

  regulation

  • induced by alanine limitation ([regulon|T-box|T-box]) [Pubmed|19258532]

additional information

• the mRNA belongs to the 46 most abundant mRNA species in dormant spores [pubmed|30782632]

Biological materials

Mutant

• MGNA-A855 (yrzB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/855 NBRP B. subtilis, Japan]
• BKE27380 ([gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCTTCACCTCTGGCT, downstream forward: _UP4_TAAAACATCGCGCCAAACCA
• BKK27380 ([gene|A0AA5289F5E92A4B2E18E4F3439F2D412208826E|yrzB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTCTTCACCTCTGGCT, downstream forward: _UP4_TAAAACATCGCGCCAAACCA

References

Research papers

• 30782632