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yabA [Thu Oct 01 2015 13:51:44 GMT+0200 (CEST)]
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yabA [Thu Oct 01 2015 13:51:44 GMT+0200 (CEST)]

inhibitor of DnaA oligomerization, tethers DnaA to the polymerase-clamp protein DnaN
locus
BSU00330
pI
6.00
mw
13.00 kDa
function
positioning of DnaA
product
negative regulator of replication initiation
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.1|DNA replication]
  • [category|SW 6|Groups of genes] → [category|SW 6.4|Phosphoproteins] → [category|SW 6.4.6|Phosphorylation on a Thr residue]
  • [SW|Categories] containing this gene/protein

  • [SW|DNA replication]
  • Gene

    Coordinates on the chromosome (coding sequence)
    42,499 -> 42,858

    Phenotypes of a mutant

  • strongly reduced growth rate in minimal medium [Pubmed|12060778]
  • The protein

    Catalyzed reaction/ biological activity

  • negative control of replication initiation [Pubmed|12060778]
  • associates with the ''oriC'' region in a [protein|search|DnaA]-dependent manner, this limits the amount of [protein|search|DnaA] that can bind the ''oriC'' region [Pubmed|21895792]
  • YabA inhibits co-operative DNA binding by [protein|search|DnaA] [Pubmed|21895792]
  • inhibits oligomerization and helix formation of [protein|search|DnaA] [Pubmed|23909787]
  • Protein family

  • yabA family (according to Swiss-Prot)
  • [SW|Domains]

  • leucine zipper
  • [SW|Cofactors]

  • Zinc [Pubmed|26615189]
  • Effectors of protein activity

  • [protein|search|DnaN] overexpression or release from the replisome decreases association of [protein|search|YabA] with ''oriC'', increases association of [protein|search|DnaA] with ''oriC'' [Pubmed|21895792]
  • Structure

  • [PDB|5DOL] [Pubmed|26615189]
  • [SW|Localization]

  • forms foci in the midcell region, this depends on the interaction with [SW|DnaA] and [SW|DnaN] [Pubmed|26615189]
  • [SW|Interactions]

  • [protein|search|DnaA]-[protein|search|YabA]-[protein|search|DnaN] (both partners interact with the C-terminal domain of YabA, the interactions are mutually exclusive at each subunit) [Pubmed|26615189,12060778]
  • forms tetramers [Pubmed|26615189]
  • Expression and Regulation

    Operon

  • ''[protein|search|darA]-[protein|search|yaaR]-[protein|search|holB]-[protein|search|yaaT]-[protein|search|yabA]-[protein|search|yabB]-[protein|search|yazA]-[protein|search|yabC]'' [Pubmed|22383849]
  • Labs working on this gene/protein

  • [SW|Philippe Noirot], Jouy-en-Josas, France [http://locus.jouy.inra.fr/cms/index.php?id=18 Homepage]
  • [SW|Alan Grossman], Cambridge, MA, USA [http://web.mit.edu/biology/www/facultyareas/facresearch/grossman.html Homepage]
  • References

    Reviews

  • 20157337
  • Original publications

  • 19578359,21895792,12060778,16461910,19737352,19081080,23909787,22383849,26615189