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ytrD [Tue Dec 13 2016 11:16:35 GMT+0100 (CET)]
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ytrD [Tue Dec 13 2016 11:16:35 GMT+0100 (CET)]

ABC transporter (hydrophobic protein, probably channel protein)
locus
BSU30430
pI
9.09
mw
36.00 kDa
function
unknown
product
ABC transporter
(hydrophobic protein, probably channel protein)
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.5|Cold stress proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • [SW|Categories] containing this gene/protein

  • [SW|ABC transporters], [SW|cold stress proteins], [SW|membrane proteins]
  • This gene is a member of the following [SW|regulons]

  • [SW|YtrA regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    3,115,989 -> 3,116,966

    The protein

    Protein family

  • ABC-5 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|search|YtrC]
  • [SW|Localization]

  • cell membrane (according to Swiss-Prot)
  • [SW|Interactions]

  • ([protein|search|YtrB]-[protein|search|YtrE])-([protein|search|YtrC]-[protein|search|YtrD])-[protein|search|YtrF] [Pubmed|10986249]
  • Expression and Regulation

    Operon

  • ''[protein|search|ytrG]-[protein|search|ytrA]-[protein|search|ytrB]-[protein|search|ytrC]-[protein|search|ytrD]-[protein|search|ytrE]-[protein|search|ytrF]'' [Pubmed|10986249,21856850]
  • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|10986249]
  • Regulation

  • induced by ramoplanin ([protein|search|YtrA]) [Pubmed|21856850]
  • expressed early in the stationary phase [Pubmed|10986249]
  • induced by cold shock (5-fold) [Pubmed|12399512]
  • Regulatory mechanism

  • [protein|search|YtrA]: transcription repression [Pubmed|10986249,21856850]
  • References

  • 10986249,10092453,12399512