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ytrD [2018-05-04 16:06:31]
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ytrD [2018-05-04 16:06:31]

ABC transporter (hydrophobic protein, probably channel protein)
locus
BSU30430
pI
9.09
mw
36.28 kDa
protein length
325 aa Sequence Blast
gene length
975 bp Sequence Blast
function
unknown
product
ABC transporter (hydrophobic protein, probably channel protein)
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.5|Cold stress proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    3,115,989 → 3,116,966

    The protein

    Protein family

  • ABC-5 integral membrane protein family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|31977FDC549E45911C333623DCA3D8941A93D8FF|YtrC]
  • [SW|Localization]

  • cell membrane (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    genes
    [gene|DCFA6025F7B4D7C5F6FB8107DDA6538CED33084D|ytrG]-[gene|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|ytrA]-[gene|BF81AD95FE6CF7662D012EF293C769E80C093D34|ytrB]-[gene|31977FDC549E45911C333623DCA3D8941A93D8FF|ytrC]-[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]-[gene|4FE6A51A0D9BBBF574EA2EF18B95B5BFC0A64CCB|ytrE]-[gene|9024AB63030C1934A954EE6A378CADBDC977E863|ytrF]
    description
    [Pubmed|10986249,21856850]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|10986249,21856850], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • regulatory mechanism

  • [protein|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA]: repression, [Pubmed|10986249,21856850], in [regulon|6A074CE9AD98A2751A216A2EA8156ACE6FFC7280|YtrA regulon]
  • regulation

  • expressed early in the stationary phase [Pubmed|10986249]
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    Biological materials

    Mutant

  • MGNA-B538 (ytrD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1537 NBRP B. subtilis, Japan]
  • BKE30430 (Δ[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30430 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC, downstream forward: _UP4_TAAGGGAGAGAGAACATATG
  • BKK30430 (Δ[gene|9C8233C48733A1E9271EE7AA1283EA9F446CF9DA|ytrD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30430 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC, downstream forward: _UP4_TAAGGGAGAGAGAACATATG
  • References

  • 10986249,10092453,12399512