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ytrD [2018-05-04 16:06:31]
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ytrD [2018-05-04 16:06:31]

ABC transporter (hydrophobic protein, probably channel protein)
Locus
BSU30430
Isoelectric point
9.09
Molecular weight
36.28 kDa
Protein length
325 aa Sequence Blast
Gene length
975 bp Sequence Blast
Function
unknown
Product
ABC transporter (hydrophobic protein, probably channel protein)
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Cellular processes → Transporters → ABC transporters → Unknown ABC transporters
  • Lifestyles → Coping with stress → Cold stress proteins
  • Groups of genes → Membrane proteins

    • Gene

    Coordinates
    3,115,989 → 3,116,966

    The protein

    Protein family

  • ABC-5 integral membrane protein family (according to Swiss-Prot)

    • Paralogous protein(s)

  • YtrC

    • Localization

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    Genes
    ytrG-ytrA-ytrB-ytrC-ytrD-ytrE-ytrF
    Description
    PubMed

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon

    • Regulatory mechanism

  • YtrA: repression, PubMed, in YtrA regulon

    • Regulation

  • expressed early in the stationary phase PubMed
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    Biological materials

    Mutant

  • MGNA-B538 (ytrD::erm), available at the NBRP B. subtilis, Japan
  • BKE30430 (ΔytrD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC, downstream forward: _UP4_TAAGGGAGAGAGAACATATG
  • BKK30430 (ΔytrD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CAACTCACTTCCCTCCAAAC, downstream forward: _UP4_TAAGGGAGAGAGAACATATG

    • References

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