SubtiBank SubtiBank
yumB [2019-05-10 15:05:42]
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yumB [2019-05-10 15:05:42]

similar to type II NADH dehydrogenase (non proton-pumping)
locus
BSU32100
pI
6.62
mw
44.77 kDa
protein length
406 aa Sequence Blast
gene length
1221 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

    • Gene

    Coordinates
    3,300,034 3,301,254

    The protein

    Paralogous protein(s)

  • [protein|56F407D408272F3674612C9CDFE4A922680EC694|Ndh]

    • Structure

  • [PDB|4NWZ] (from Caldalkalibacillus thermarum, 62% identity) [pubmed|24444429]

    • Expression and Regulation

    Operons

    genes
    [gene|9B3E9074975758BCB3D06820E4A35F8C2B78DCEB|yumB]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B571 (yumB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1570 NBRP B. subtilis, Japan]
  • BKE32100 ([gene|9B3E9074975758BCB3D06820E4A35F8C2B78DCEB|yumB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE32100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACATCCACCTTCTCTT, downstream forward: _UP4_TAAAAACCCGCGGAAGCGGG
  • BKK32100 ([gene|9B3E9074975758BCB3D06820E4A35F8C2B78DCEB|yumB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK32100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCACATCCACCTTCTCTT, downstream forward: _UP4_TAAAAACCCGCGGAAGCGGG

    • References

  • 17015645,19935659,24444429