SubtiBank SubtiBank
yaaK
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yaaK

similar to DNA-binding protein
locus
BSU_00200
pI
4.54
mw
11.64 kDa
protein length
107 aa Sequence Blast
gene length
324 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    28,529 28,852

    The protein

    Protein family

  • YbaB/EbfC family (single member, according to UniProt)

    • Structure

  • [PDB|1YBX] (from Clostridium thermocellum, 53% identity)

    • [SW|Localization]

  • nucleoid (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|73D063EDC412F7F28DA27C986ECCCD1C4A1F6618|dnaX]-[gene|9AFCEFE83560B1E2B1FFD7CFD2E4F17FAE137889|yaaK]-[gene|BEBAF1EB53EBB3E7558BB5FE73C418B50000FA29|recR]-[gene|C5127208E7562F09249112240F0BE8C582B2E5AD|yaaL]-[gene|CB5D3A2E5BEE336539BEB2D7C5D9C3A63C78FD01|bofA]
    description
    [Pubmed|22383849]
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    additional information

  • the mRNA is very stable (> 15 min) [pubmed|12884008]

    • Biological materials

    Mutant

  • MGNA-B892 (yaaK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1891 NBRP B. subtilis, Japan]
  • BKE00200 ([gene|9AFCEFE83560B1E2B1FFD7CFD2E4F17FAE137889|yaaK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE00200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCATTCACTCTCTTTC, downstream forward: _UP4_TTATTCTAGGGGGATAAAAG
  • BKK00200 ([gene|9AFCEFE83560B1E2B1FFD7CFD2E4F17FAE137889|yaaK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK00200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCATTCACTCTCTTTC, downstream forward: _UP4_TTATTCTAGGGGGATAAAAG

    • References

  • 12884008,19594923