SubtiBank SubtiBank
ywrF [2019-06-21 11:30:28]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ywrF [2019-06-21 11:30:28]

similar to nitrilotriacetate monooxygenase component B
locus
BSU36080
pI
5.00
mw
22.44 kDa
protein length
205 aa Sequence Blast
gene length
618 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    3,717,999 3,718,616

    The protein

    Protein family

  • flavoredoxin family (with [protein|0405FF18AEB2DC3632CFFF25E82EFA08D0A48F57|YdfF], according to UniProt)

    • Structure

  • [PDB|3BPK] (from B. cereus, 55% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|98D13FCE1FD5EB9C6581F5416F7B4FD40805E047|ywrF]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-A571 (ywrF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/571 NBRP B. subtilis, Japan]
  • BKE36080 ([gene|98D13FCE1FD5EB9C6581F5416F7B4FD40805E047|ywrF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE36080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCAACAACCGCCTTTA, downstream forward: _UP4_TGAAGAGAAGGACTATTTAA
  • BKK36080 ([gene|98D13FCE1FD5EB9C6581F5416F7B4FD40805E047|ywrF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK36080 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGCAACAACCGCCTTTA, downstream forward: _UP4_TGAAGAGAAGGACTATTTAA