SubtiBank SubtiBank
ypbS [2019-07-03 11:52:59]
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ypbS [2019-07-03 11:52:59]

unknown
locus
BSU22020
pI
8.15
mw
9.75 kDa
protein length
85 aa Sequence Blast
gene length
258 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    2,312,207 2,312,464

    The protein

    Protein family

  • Orn/Lys/Arg decarboxylase class-II family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|9899D0CC5FF530A48532A653075494686796564D|ypbS]-[gene|BD8D1EBA85928C4ECA4FF50556FC7C59F9BC0E9D|ypzF]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|22F930B371A833BAEA84B32FADBB2BBA0B91A53B|dynA]-[gene|9899D0CC5FF530A48532A653075494686796564D|ypbS]-[gene|BD8D1EBA85928C4ECA4FF50556FC7C59F9BC0E9D|ypzF]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8396117], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B273 (ypbS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1272 NBRP B. subtilis, Japan]
  • BKE22020 ([gene|9899D0CC5FF530A48532A653075494686796564D|ypbS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE22020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAATCGTTCATCTCGCT, downstream forward: _UP4_TAAGCTGGATGATCCTGTCG
  • BKK22020 ([gene|9899D0CC5FF530A48532A653075494686796564D|ypbS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK22020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAATCGTTCATCTCGCT, downstream forward: _UP4_TAAGCTGGATGATCCTGTCG