SubtiBank SubtiBank
ylnD
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ylnD

probable uroporphyrin-III C-methyltransferase
Locus
BSU_15610
Isoelectric point
5.75
Molecular weight
28.37 kDa
Protein length
257 aa Sequence Blast
Gene length
774 bp Sequence Blast
Function
siroheme biosynthesis , sulfite reduction
Product
probable uroporphyrin-III C-methyltransferase
Essential
no
E.C.
2.1.1.107
Synonyms
sumT

Genomic Context

      
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Categories containing this gene/protein

Gene

Coordinates
1,634,061 1,634,834

The protein

Catalyzed reaction/ biological activity

  • 2 S-adenosyl-L-methionine + uroporphyrinogen III --> H+ + precorrin-2 + 2 S-adenosyl-L-homocysteine (according to UniProt)
  • Protein family

  • precorrin methyltransferase family (with NasF, according to UniProt)
  • Paralogous protein(s)

    Structure

  • 1PJQ (CysG from Salmonella enterica, 46% identity) PubMed
  • Expression and Regulation

    Operons

    Description

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon
  • Regulatory mechanism

  • CymR: repression, in CymR regulon
  • S-box: termination, the S-box riboswitch binds S-adenosylmethionine resulting in termination PubMed, in S-box
  • Regulation

  • induced by methionine starvation (S-box) PubMed
  • the S-box RNA is degraded by RNase Y PubMed
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    Biological materials

    Mutant

  • MGNA-B368 (ylnD::erm), available at the NBRP B. subtilis, Japan
  • BKE15610 (ylnD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCGTATTTCCCCCGATCT, downstream forward: _UP4_GATTTAAGCGAGGCGTTGTA
  • BKK15610 (ylnD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCGTATTTCCCCCGATCT, downstream forward: _UP4_GATTTAAGCGAGGCGTTGTA
  • References

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