SubtiBank SubtiBank
xkdA
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xkdA

PBSX prophage
locus
BSU_12500
pI
6.69
mw
23.38 kDa
protein length
198 aa Sequence Blast
gene length
597 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ykxA
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.1|PBSX prophage]

    • Gene

    Coordinates
    1,320,570 1,321,166

    Expression and Regulation

    Operons

    genes
    [gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]
    description
    [Pubmed|16267290]

    sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]

    • regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

    • regulation

  • induced upon DNA damage ([protein|search|LexA]) [Pubmed|16267290]
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    Biological materials

    Mutant

  • BKE12500 ([gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTGAATACTCCCTTTCG, downstream forward: _UP4_TGATCAAATACGGGCTGAGG
  • BKK12500 ([gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTGAATACTCCCTTTCG, downstream forward: _UP4_TGATCAAATACGGGCTGAGG

    • References

  • 16267290,26577401