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yhdR [2017-12-21 15:30:18]
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yhdR [2017-12-21 15:30:18]

similar to aspartate aminotransferase
Locus
BSU09570
Isoelectric point
5.01
Molecular weight
43.73 kDa
Protein length
393 aa Sequence Blast
Gene length
1179 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
E.C.
2.6.1.1
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Groups of genes → Poorly characterized/ putative enzymes

    • Gene

    Coordinates
    1,034,046 → 1,035,227

    The protein

    Catalyzed reaction/ biological activity

  • L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate (according to Swiss-Prot)

    • Protein family

  • class-I pyridoxal-phosphate-dependent aminotransferase family (according to Swiss-Prot)

    • Paralogous protein(s)

  • AlaT (31%)

    • Structure

  • 3ELE (from Eubacterium rectale, 34% identity)

    • Localization

  • cytoplasm (according to Swiss-Prot)

    • Additional information

  • The gene is annotated in KEGG as aspartate aminotransferase EC 2.6.1.1. In MetaCyc the protein is marked as “similar to aspartate aminotransferase”. No EC annotation is available in Swiss-Prot. No literature/experimental evidence supporting the annotation is availablavailable. PubMed

    • Expression and Regulation

    Operons

    Genes
    yhdR
    Description
    PubMed
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    Biological materials

    Mutant

  • MGNA-B485 (yhdR::erm), available at the NBRP B. subtilis, Japan
  • BKE09570 (ΔyhdR::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA
  • BKK09570 (ΔyhdR::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCTGTCCCTTCCGCATAT, downstream forward: _UP4_TAAGAAGGCAAAGAAAAGAA