SubtiBank SubtiBank
yabR
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yabR

similar to the C-terminal domain of E. coli polyribonucleotide phosphorylase and to four repeated domains at the N-terminus of E. coli ribosomal protein S1
Locus
BSU_00630
Isoelectric point
10.34
Molecular weight
14.05 kDa
Protein length
128 aa Sequence Blast
Gene length
387 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
Loading

Categories containing this gene/protein

  • Lifestyles → Sporulation → Sporulation proteins → Sporulation proteins/ other
  • Groups of genes → Poorly characterized/ putative enzymes

    • Gene

    Coordinates
    69,626 70,012

    The protein

    Protein family

  • Peptidase U57 family (together with YabG) (according to UniProt)

    • Paralogous protein(s)

  • YugI: 51% identity

    • Domains

  • S1 domain (aa 4 ... 74) (according to the Interpro database)

    • Structure

  • 2K4K (YugI, 51% identity from aa 3 ... 91) PubMed

    • Expression and Regulation

    Operons

    Genes
    yabM-yabN-yabO-yabP-yabQ-divIC-yabR
    Description
    PubMed

    Sigma factors

  • SigM: sigma factor, PubMed, in SigM regulon
  • SigE: sigma factor, PubMed, in SigE regulon
  • SigW: sigma factor, PubMed, in SigW regulon
  • SigD: sigma factor, PubMed, in SigD regulon
  • SigX: sigma factor, PubMed, in SigX regulon

    • Regulation

  • expressed during sporulation (SigE) PubMed
    • view in new tab

    Genes
    yabP-yabQ-divIC-yabR
    Description
    PubMed

    Regulation

  • expressed during sporulation (SigE) PubMed

    • Additional information

  • there are about 50,000 molecules of DivIC per cell PubMed
    • view in new tab

    Genes
    divIC-yabR
    Description
    PubMed

    Regulation

  • expressed during sporulation (SigE) PubMed and under stress conditions

    • Additional information

  • there are about 50,000 molecules of DivIC per cell PubMed
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B919 (yabR::erm), available at the NBRP B. subtilis, Japan
  • BKE00630 (yabR::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA
  • BKK00630 (yabR::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAAAAAAAGTGCTCCTCC, downstream forward: _UP4_TAACTTGCTGCTTTCTATAA

    • References

    Loading