ymaB [2019-06-17 15:07:32]

putative Nudix hydrolase

Locus: BSU17400

Isoelectric point: 4.51

Molecular weight: 23.24 kDa

Protein length: 206 aa

Gene length: 621 bp

Function: unknown

Product: unknown

Essential: no

Synonyms

Genomic Context

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Categories containing this gene/protein

• Groups of genes → Proteins of unknown function

Gene

Coordinates: 1,872,128 1,872,748

The protein

Structure

• 3E57 (from Thermotoga maritima, 35% identity)

Expression and Regulation

Operons

• Genes: nrdI-nrdE-nrdF-ymaB
  Description: PubMed

  Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon

  Regulatory mechanism

  • ResD: activation, PubMed, in ResD regulon
  • NrdR: repression, (predicted) PubMed, in NrdR regulon
  • PerR: transcription repression, PubMed, in PerR regulon

  Regulation

  • expressed under anaerobic conditions (ResD) PubMed

  Additional information

  • A ncRNA is predicted between 'ymzA' and 'nrdI' PubMed

• Genes: ymzA-nrdI-nrdE-nrdF-ymaB
  Description: PubMed

Biological materials

Mutant

• MGNA-B380 (ymaB::erm), available at the NBRP B. subtilis, Japan
• BKE17400 (ymaB::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT, downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG
• BKK17400 (ymaB::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATGGGTACTGCGTCCTCCT, downstream forward: _UP4_TAAAAAAACCCGGTTTCTCG

References

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