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ymaB [Tue Dec 13 2016 11:16:33 GMT+0100 (CET)]
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ymaB [Tue Dec 13 2016 11:16:33 GMT+0100 (CET)]

putative Nudix hydrolase
locus
BSU17400
pI
4.00
mw
23.00 kDa
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • [SW|Categories] containing this gene/protein

  • [SW|proteins of unknown function]

    • This gene is a member of the following [SW|regulons]

  • [SW|NrdR regulon], [SW|ResD regulon]

    • Gene

    Coordinates on the chromosome (coding sequence)
    1,872,128 -> 1,872,748

    The protein

    Structure

  • [PDB|3E57] (from ''Thermotoga maritima'', 35% identity)

    • Expression and Regulation

    Operon

  • ''[protein|search|nrdI]-[protein|search|nrdE]-[protein|search|nrdF]-[protein|search|ymaB]'' [Pubmed|16885274]

    • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|16885274]

    • Regulation

  • expressed under anaerobic conditions ([protein|search|ResD]) [Pubmed|16885274]
  • induced by hydrogen peroxide ([protein|search|PerR]) [Pubmed|27920297]

    • Regulatory mechanism

  • [protein|search|PerR]: transcription repression [Pubmed|27920297]
  • [protein|search|ResD]: transcription activation [Pubmed|16885274]
  • [SW|NrdR]: transcription repression [Pubmed|27920297]

    • References

  • 16885274,8969495,15949864,27920297