SubtiBank SubtiBank
ydcG [2017-12-15 11:48:08]
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ydcG [2017-12-15 11:48:08]

locus
BSU04760
pI
9.61
mw
16.46 kDa
protein length
146 aa Sequence Blast
gene length
438 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    524,782 → 525,222

    The protein

    Protein family

  • UPF0310 family (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|20D50DA11B864E6C719CC34BE27C7900893EA054|ydcF]-[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]
    description
    [pubmed|29240826,22383849]

    regulatory mechanism

  • [protein|B7F5FA5C656D39970959BC857E93B78B1A063098|PamR]: repression, [pubmed|29240826], in [regulon|B7F5FA5C656D39970959BC857E93B78B1A063098|PamR regulon]
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    genes
    [gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]-[gene|B7F5FA5C656D39970959BC857E93B78B1A063098|pamR]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [pubmed|22383849], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C095 (ydcG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2093 NBRP B. subtilis, Japan]
  • BKE04760 (Δ[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04760 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AACGCCGATCCAGTAATTTG, downstream forward: _UP4_GCACAAGCGATGGGAGTTAA
  • BKK04760 (Δ[gene|89AB146F447696EF1CBE219C9A2FB5CBB380F847|ydcG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04760 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AACGCCGATCCAGTAATTTG, downstream forward: _UP4_GCACAAGCGATGGGAGTTAA