SubtiBank SubtiBank
yybK [2017-12-02 18:46:24]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yybK [2017-12-02 18:46:24]

similar to ABC transporter (membrane protein)
locus
BSU40610
pI
9.75
mw
28.86 kDa
protein length
251 aa Sequence Blast
gene length
753 bp Sequence Blast
function
unknown
product
ABC transporter (membrane protein)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.2|Exporters] → [category|SW 1.2.1.2.6|Exporters of unknown function]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    4,175,117 → 4,175,872

    Expression and Regulation

    Operons

    genes
    [gene|5A68286ADFB1B334DC626612C74D03AE4DBAF0A7|yybN]-[gene|BA4CB875FD72C7E7767AFA44A5D8C32448F5E18C|yybM]-[gene|CE98D731B8D9BDBF4EB119346BB59F5E5C48C827|yybL]-[gene|8950AD10BE5B6EDA74C341D272201D1BA9DBAC85|yybK]-[gene|6260516A5ED4A49457997592F29CEC10B7A2CCA7|yybJ]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA] [Pubmed|27902860,15743949], in [regulon|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok regulon]
  • [protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA]: repression, [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[protein|6740108089F13116F200C15F35C2E7561E990FEB|DnaA] [Pubmed|27902860,15743949], in [regulon|6740108089F13116F200C15F35C2E7561E990FEB|DnaA regulon]

    • regulation

  • repressed by [protein|1508770D5BCA5739D13E3ABD11CC5C103C07FF25|Rok]-[SW|DnaA] [Pubmed| 27902860,15743949]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B843 (yybK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1842 NBRP B. subtilis, Japan]
  • BKE40610 (Δ[gene|8950AD10BE5B6EDA74C341D272201D1BA9DBAC85|yybK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CCTCATTTTTTATAATCCTT, downstream forward: _UP4_CAATGATTGAGGTATTAAAC
  • BKK40610 (Δ[gene|8950AD10BE5B6EDA74C341D272201D1BA9DBAC85|yybK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40610 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CCTCATTTTTTATAATCCTT, downstream forward: _UP4_CAATGATTGAGGTATTAAAC

    • References

  • 10092453,23199363,15743949,27902860