yjdB

unknown

locus: BSU_11990

pI: 10.00

mw: 12.25 kDa

protein length: 115 aa

gene length: 348 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 1,269,733 1,270,080

The protein

[SW|Domains]

• BIG2 domain (aa 36-114) (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|890A1723F595FCF252E5E9EA3EE3A73204ADD8C1|yjdB]
  description: [Pubmed|16291680]

  regulatory mechanism

  • [protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP]: activation, [Pubmed|16291680], in [regulon|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

  regulation

  • expressed under conditions of phosphate limitation ([protein|search|PhoP]) [Pubmed|16291680]

Biological materials

Mutant

• MGNA-A263 (yjdB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/263 NBRP B. subtilis, Japan]
• BKE11990 ([gene|890A1723F595FCF252E5E9EA3EE3A73204ADD8C1|yjdB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE11990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTGAAACACTCCTTTA, downstream forward: _UP4_TAATCTTTATCCGCCAGATT
• BKK11990 ([gene|890A1723F595FCF252E5E9EA3EE3A73204ADD8C1|yjdB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK11990 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTGAAACACTCCTTTA, downstream forward: _UP4_TAATCTTTATCCGCCAGATT

References

• 16291680,20817675,25666134