SubtiBank SubtiBank
yusQ [2019-02-01 12:23:29]
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yusQ [2019-02-01 12:23:29]

similar to acyloate catabolism
locus
BSU32890
pI
5.47
mw
15.11 kDa
protein length
127 aa Sequence Blast
gene length
384 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    3,376,617 3,377,000

    The protein

    Protein family

  • 4-oxalocrotonate tautomerase family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|YodA]

    • Structure

  • [PDB|2AAG] (27% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|652A1CC7F6D33E2C9032E557FAF34B5A828CD441|yusS]-[gene|6A16E8F87DA1D5835DFCD5803B11D0E004E6F4FE|yusR]-[gene|877C25D538BAF1132290BAF7FBB2E7921B51266A|yusQ]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
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    Biological materials

    Mutant

  • MGNA-B596 (yusQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1595 NBRP B. subtilis, Japan]
  • BKE32890 ([gene|877C25D538BAF1132290BAF7FBB2E7921B51266A|yusQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE32890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGGCATCTCCCCGCATCCCT, downstream forward: _UP4_TAAAAAACCCCGCGGATTGA
  • BKK32890 ([gene|877C25D538BAF1132290BAF7FBB2E7921B51266A|yusQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK32890 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGGCATCTCCCCGCATCCCT, downstream forward: _UP4_TAAAAAACCCCGCGGATTGA