yyaN [2019-09-04 09:57:23]

similar to transcriptional regulator ([SW|MerR family])

locus: BSU_40800

pI: 9.31

mw: 15.91 kDa

protein length: 138 aa

gene length: 417 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
• [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]

Gene

Coordinates: 4,189,796 4,190,212

The protein

Protein family

• [SW|MerR family]

Structure

• [PDB|3QAO] (from Listeria monocytogenes, 29% identity)

Expression and Regulation

Operons

• genes: [gene|852ECFA6F254167090AA393E6E0D269F49A4CC6E|yyaN]-[gene|D9D907A6004AFE7A4D7BB92A8955593F00DC7A2C|yyaM]-[gene|56A5266F8F42E0FCFDE941CB71AD103120CEB5E9|yyaL]
  description: [Pubmed|22383849]

additional information

• translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

Biological materials

Mutant

• MGNA-B860 (yyaN::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1859 NBRP B. subtilis, Japan]
• BKE40800 ([gene|852ECFA6F254167090AA393E6E0D269F49A4CC6E|yyaN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATCCCTCTCATTTAAT, downstream forward: _UP4_TTGAAAGAGGAAGTGGAAAA
• BKK40800 ([gene|852ECFA6F254167090AA393E6E0D269F49A4CC6E|yyaN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40800 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATCCCTCTCATTTAAT, downstream forward: _UP4_TTGAAAGAGGAAGTGGAAAA