ydgG [2019-08-28 10:16:05]

similar to transcriptional regulator ([SW|MarR family])

locus: BSU_05640

pI: 5.62

mw: 17.13 kDa

protein length: 152 aa

gene length: 459 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 608,933 609,391

The protein

Protein family

• [SW|MarR family]

Expression and Regulation

Operons

• genes: [gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]-[gene|1632474628BEA113F297897D152276A1AB73BAE8|ydgH]
  description: [Pubmed|16267290]

  regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]

  regulation

  • induced by DNA damage ([protein|search|LexA]) [Pubmed|16267290]

Biological materials

Mutant

• MGNA-C160 (ydgG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2158 NBRP B. subtilis, Japan]
• CS209 (''[gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]''::''aphA3'', available in [SW|Colin Harwood]'s and [SW|Jörg Stülke]'s labs) [Pubmed|27197833]
• BKE05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC
• BKK05640 ([gene|833F4B9ECB609D5EBAD0CAA55E1F601A5C1C3787|ydgG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05640 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATATCTTCCCCTCCTCAT, downstream forward: _UP4_TTTAAAGGAGGAGATTCTGC

References

• 16267290,27197833