SubtiBank SubtiBank
yxeQ [2018-05-17 16:20:36]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yxeQ [2018-05-17 16:20:36]

putative dehydratase
locus
BSU39460
pI
5.94
mw
47.64 kDa
protein length
445 aa Sequence Blast
gene length
1335 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    4,055,536 → 4,056,873

    The protein

    Protein family

  • prpD family (according to Swiss-Prot)

    • Structure

  • [PDB|2HP3] (30% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|19E6EF9CCA31440EAC046F8D6CA98B6A08589D58|yxeK]-[gene|EBC2B9107AD50DD8F8174FC0BE4AD90DEE6A7CCA|snaB]-[gene|D96EEDABB73AC66E6AB772431819E7C767DC8B9A|yxeM]-[gene|FFD5F07480A0E5A74852C69C436EE289BA72FC7F|yxeN]-[gene|F8C800CF71D21A1F3265977C4F0EE191D0FFE36A|yxeO]-[gene|C99AA3FDBB561BCED60915078DC746690C071753|sndB]-[gene|7DDB283173267AA106DC277787AAAB4F4F9975F4|yxeQ]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|16513748], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|50930C56C27D22715620A350220E3C56ADB41020|CymR]: repression, [Pubmed|16513748], in [regulon|50930C56C27D22715620A350220E3C56ADB41020|CymR regulon]

    • regulation

  • repressed in the presence of cysteine ([protein|50930C56C27D22715620A350220E3C56ADB41020|CymR]) [Pubmed|16513748]

    • additional information

  • the amount of the mRNA is substantially decreased upon depletion of [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [PubMed|21815947]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B713 (yxeQ::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1712 NBRP B. subtilis, Japan]
  • BKE39460 (Δ[gene|7DDB283173267AA106DC277787AAAB4F4F9975F4|yxeQ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCTGCTGTCAGCCCTTGTT, downstream forward: _UP4_TAAGATCAACTCTATTCGGT
  • BKK39460 (Δ[gene|7DDB283173267AA106DC277787AAAB4F4F9975F4|yxeQ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCTGCTGTCAGCCCTTGTT, downstream forward: _UP4_TAAGATCAACTCTATTCGGT

    • References

  • 16513748,29626092