SubtiBank SubtiBank
yxeQ [2018-05-17 16:20:36]
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yxeQ [2018-05-17 16:20:36]

putative dehydratase
Locus
BSU39460
Isoelectric point
5.94
Molecular weight
47.64 kDa
Protein length
445 aa Sequence Blast
Gene length
1335 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Groups of genes → Poorly characterized/ putative enzymes

    • Gene

    Coordinates
    4,055,536 → 4,056,873

    The protein

    Protein family

  • prpD family (according to Swiss-Prot)

    • Structure

  • 2HP3 (30% identity)

    • Expression and Regulation

    Operons

    Genes
    yxeK-snaB-yxeM-yxeN-yxeO-sndB-yxeQ
    Description
    PubMed

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon

    • Regulatory mechanism

  • CymR: repression, PubMed, in CymR regulon

    • Regulation

  • repressed in the presence of cysteine (CymR) PubMed

    • Additional information

  • the amount of the mRNA is substantially decreased upon depletion of RNase Y PubMed
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    Biological materials

    Mutant

  • MGNA-B713 (yxeQ::erm), available at the NBRP B. subtilis, Japan
  • BKE39460 (ΔyxeQ::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_ACCTGCTGTCAGCCCTTGTT, downstream forward: _UP4_TAAGATCAACTCTATTCGGT
  • BKK39460 (ΔyxeQ::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_ACCTGCTGTCAGCCCTTGTT, downstream forward: _UP4_TAAGATCAACTCTATTCGGT

    • References

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