SubtiBank SubtiBank
ypfD [2018-12-03 16:54:32]
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ypfD [2018-12-03 16:54:32]

similar to ribosomal protein S1
Locus
BSU22880
Isoelectric point
4.57
Molecular weight
42.24 kDa
Protein length
382 aa Sequence Blast
Gene length
1146 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
jofD

Genomic Context

      
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Categories containing this gene/protein

Gene

Coordinates
2,394,664 → 2,395,812

The protein

Protein family

  • ribosomal protein S1P family (according to Swiss-Prot)
  • Domains

  • 4 reiterated S1-like domains (aa 16 ...84, aa 102 ... 167, aa 188 ... 256, aa 273 ... 342)
  • Modification

  • phosphorylation on Ser-243 PubMed
  • Structure

  • 5X8R (chloroplast, small ribosomal subunit, 37% identity to aa 14 .. 266) PubMed
  • 1SRO (E. coli S1 RNA-binding domain, 37% identity to aa 185 ... 343) PubMed
  • Localization

  • cytoplasm (according to Swiss-Prot)
  • Additional information

  • belongs to the 100 most abundant proteins PubMed
  • Expression and Regulation

    Biological materials

    Mutant

  • BKE22880 (ΔypfD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGAATAACCTCCTTGG, downstream forward: _UP4_TAATTGGTGATAAACGTGAC
  • BKK22880 (ΔypfD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATTTGAATAACCTCCTTGG, downstream forward: _UP4_TAATTGGTGATAAACGTGAC
  • References

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