SubtiBank SubtiBank
swsB [2019-12-27 13:59:20]
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swsB [2019-12-27 13:59:20]

similar to deacetylase
locus
BSU_16700
pI
9.36
mw
36.31 kDa
protein length
319 aa Sequence Blast
gene length
960 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ylxY,ymxI
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.4|Germination] → [category|SW 4.2.4.2|Additional germination proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    1,741,618 1,742,577

    The protein

    Protein family

  • [SW|polysaccharide deacetylase family] (according to UniProt)

    • [SW|Domains]

  • [SW|NodB homology domain] (aa 130-306) (according to UniProt)

    • Structure

  • [PDB|1W17] ([protein|88E167795BBCB8529E322E3A4DC9965EA6AAA617|PdaA], corresponds to aa 120 ... 317, 31% identity) [pubmed|15251431]

    • Biological materials

    Mutant

  • BKE16700 ([gene|77C3C4ADCBD38EEA99C44850CAEB310C59B6C938|swsB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG
  • BKK16700 ([gene|77C3C4ADCBD38EEA99C44850CAEB310C59B6C938|swsB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTCTGTCCCCCCCTCA, downstream forward: _UP4_TAACAGATGAAGGCAGCTTG

    • References

  • 23123912,15251431,31871031