SubtiBank SubtiBank
ymfJ [2020-04-24 17:22:14]
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ymfJ [2020-04-24 17:22:14]

unknown
locus
BSU_16880
pI
4.26
mw
9.51 kDa
protein length
85 aa Sequence Blast
gene length
258 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]

    • Gene

    Coordinates
    1,760,464 1,760,721

    Expression and Regulation

    Operons

    genes
    [gene|72A88CB8FEAB634F0E284BE4CF9A31C894F25714|ymfJ]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [pubmed|30782632], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [pubmed|30782632], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]
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    additional information

  • the mRNA belongs to the 46 most abundant mRNA species in dormant spores [pubmed|30782632]

    • Biological materials

    Mutant

  • BKE16880 ([gene|72A88CB8FEAB634F0E284BE4CF9A31C894F25714|ymfJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTTGTTTCCTCCATTT, downstream forward: _UP4_TAGGAAGAGAGGGGATTTTT
  • BKK16880 ([gene|72A88CB8FEAB634F0E284BE4CF9A31C894F25714|ymfJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16880 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGCTTGTTTCCTCCATTT, downstream forward: _UP4_TAGGAAGAGAGGGGATTTTT

    • References

    Research papers

  • 30782632