yckB [2019-06-19 09:26:45]

similar to amino acid [SW|ABC transporter] (binding protein)

locus: BSU03380

pI: 8.49

mw: 31.57 kDa

protein length: 287 aa

gene length: 864 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 367,995 368,858

The protein

Protein family

• bacterial solute-binding protein 3 family (according to Swiss-Prot)

Paralogous protein(s)

• [protein|2056F8EEDF9D3027CFD808E8D0C5DF544DBDD3F3|TcyA]

Structure

• [PDB|2IEE]

[SW|Localization]

• associated to the membrane (via [protein|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|YckA]) [Pubmed|10092453]

Expression and Regulation

Operons

• genes: [gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]-[gene|1872614A6F7DBF7231348AC3DAE4ED3295ACEB41|yckA]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C053 (yckB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2051 NBRP B. subtilis, Japan]
• CS208 (''[gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]''::''aphA3'', available in [SW|Colin Harwood]'s and [SW|Jörg Stülke]'s labs) [Pubmed|27197833]
• BKE03380 ([gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE03380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTATAGTTCCCCCAATC, downstream forward: _UP4_GACGTTGATTTGTAATCGGA
• BKK03380 ([gene|7050A2CC4BA2183C3CD22A246846CBCE43D73ABC|yckB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK03380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCTATAGTTCCCCCAATC, downstream forward: _UP4_GACGTTGATTTGTAATCGGA

References

• 10092453,23038252,27197833