SubtiBank SubtiBank
ydeS [2019-09-02 11:33:50]
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ydeS [2019-09-02 11:33:50]

similar to transcriptional regulator ([SW|TetR family])
locus
BSU_05320
pI
7.18
mw
22.00 kDa
protein length
198 aa Sequence Blast
gene length
597 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    578,337 578,933

    The protein

    Protein family

  • [SW|TetR family]

    • Structure

  • [PDB|2FQ4] (from B. cereus, 76% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|6CF44499017A78B8C43D68259F52056BCCB3EB8A|ydeS]-[gene|B836B265FCC3FBD0BA5DCAC534A72E902C9D45EE|ydzO]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C140 (ydeS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2138 NBRP B. subtilis, Japan]
  • BKE05320 ([gene|6CF44499017A78B8C43D68259F52056BCCB3EB8A|ydeS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACATAAATCATTCCTTCCC, downstream forward: _UP4_TAGCTGATAAGAACTGCAAA
  • BKK05320 ([gene|6CF44499017A78B8C43D68259F52056BCCB3EB8A|ydeS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACATAAATCATTCCTTCCC, downstream forward: _UP4_TAGCTGATAAGAACTGCAAA

    • References

    Reviews

  • 24006471