SubtiBank SubtiBank
yocD
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yocD

similar to immunity to bacteriotoxins
Locus
BSU_19170
Isoelectric point
5.58
Molecular weight
36.25 kDa
Protein length
325 aa Sequence Blast
Gene length
978 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Lifestyles → Coping with stress → Toxins, antitoxins and immunity against toxins/ based on similarity

    • Gene

    Coordinates
    2,088,257 2,089,234

    The protein

    Protein family

  • peptidase S66 family (with YkfA, according to UniProt)

    • Structure

  • 3SR3 (MccF from B. anthracis, 33% identity, 66% similarity)

    • Expression and Regulation

    Operons

    Genes
    yocC-yocD
    Description
    PubMed
    view in new tab

    Genes
    yocD
    Description
    PubMed

    Regulatory mechanism

  • AbrB: repression, PubMed, in AbrB regulon
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B413 (yocD::erm), available at the NBRP B. subtilis, Japan
  • BKE19170 (yocD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
  • BKK19170 (yocD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT

    • References

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