ylqC

unknown

locus: BSU_16000

pI: 7.34

mw: 8.93 kDa

protein length: 81 aa

gene length: 246 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 1,673,892 1,674,137

The protein

Protein family

• UPF0109 family (single member, according to UniProt)

[SW|Domains]

• KH domain (aa 34-81) (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]-[gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh]-[gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]-[gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]-[gene|34B0FA6E7E25D1E5D8A54B70F5562BD0BD05B498|rimM]-[gene|885ECD9FAAC8BC95D32F049825D6B6244C046112|trmD]-[gene|51368512B8322EDBCA92674EC2B97CF26087D8A9|rplS]
  description: [Pubmed|29794222]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8335643], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  regulation

  • the mRNA is processed between [gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh] and [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]

• genes: [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]
  description: [Pubmed|8335643]

  regulatory mechanism

  • [regulon|stringent response|stringent response]: negative regulation, in [regulon|stringent response|stringent response]

  regulation

  • [protein|search|RelA] dependent downregulation (Class I) during stringent response [Pubmed|11948165]

Biological materials

Mutant

• MGNA-B173 (ylqC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1172 NBRP B. subtilis, Japan]
• 1A827 ( ''ylqC''::''erm''), [Pubmed|12682299], available at [http://pasture.asc.ohio-state.edu/BGSC/getdetail.cfm?bgscid=1A827&Search=1A827 BGSC]
• BKE16000 ([gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCTTCCAAGTGTTGATCAG, downstream forward: _UP4_TAAAAGGGAGAGGGCCGGCA
• BKK16000 ([gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16000 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCTTCCAAGTGTTGATCAG, downstream forward: _UP4_TAAAAGGGAGAGGGCCGGCA

References

• 8335643