SubtiBank SubtiBank
ydhF [2019-03-13 18:43:38]
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ydhF [2019-03-13 18:43:38]

unknown
locus
BSU05730
pI
6.16
mw
26.38 kDa
protein length
236 aa Sequence Blast
gene length
711 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]

    • Gene

    Coordinates
    619,321 620,031

    The protein

    [SW|Localization]

  • extracellular (signal peptide) [Pubmed|18957862], lipid modification as retention signal

    • Expression and Regulation

    Operons

    genes
    [gene|3B95AB3021280215B6B487A348D78FB5797AEEA6|phoB]-[gene|66D3E978E3DBA0410CA5597B5B860DF27C97335A|ydhF]
    description
    [Pubmed|10913081]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190,16030210], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP]: activation, [Pubmed|9335276,10913081,16030210], in [regulon|638D6D2FCCA2A167EFED05CB4E60C2D78D5319AE|PhoP regulon]

    • regulation

  • expressed under conditions of phosphate limitation ([protein|search|PhoP]) [Pubmed|9335276,10913081,16030210]
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    Biological materials

    Mutant

  • MGNA-C181 (ydhF::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2179 NBRP B. subtilis, Japan]
  • BKE05730 ([gene|66D3E978E3DBA0410CA5597B5B860DF27C97335A|ydhF]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATGATTCCTCCATTAA, downstream forward: _UP4_TAAATCAAGAACTCCCGTAC
  • BKK05730 ([gene|66D3E978E3DBA0410CA5597B5B860DF27C97335A|ydhF]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGATGATTCCTCCATTAA, downstream forward: _UP4_TAAATCAAGAACTCCCGTAC

    • References

  • 16030210,9335276,10913081,18957862